Industry: Startups and Software

Accountants for Startups, SaaS and Software Businesses

A startup's finances are the opposite of most small businesses. There may be no profit for years, and that is the plan. What matters is runway, the R&D refund, the terms of the next raise and the structure that holds it together. We work with founders in Brisbane and across Australia building software, SaaS, apps and deep tech, and this page covers the programs, rules and decisions that come up in the first few years.

Startup and SaaS Accountant Brisbane
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At a glance
01

What a startup needs from its accountant

The questions a founder brings are about cash, not profit: how many months of runway are left, what the R&D refund will be and when it lands, whether the next raise is priced right and what it does to the founders' ownership. An accountant who only prepares a tax return and a BAS is missing most of the job. The business is being built to a different set of numbers and the finance function has to be built the same way.

The work is a mix of compliance that has to be clean for investors, government programs that can be worth a large share of the budget, and structural decisions that are cheap to get right early and expensive to fix later. We cover all three from pre-revenue through to Series A and beyond, and we run the finance side for founders who are not yet ready to hire a finance lead.

This page covers the R&D Tax Incentive, investor and employee concessions, SAFE notes and cap tables, subscription revenue, grants and the first steps offshore.

02

The R&D Tax Incentive, done properly

The Research and Development Tax Incentive is the most valuable program available to an Australian startup and the one most often done badly. For eligible companies below the aggregated turnover threshold it is a refundable tax offset, which means that in a loss year it comes back as cash. Above that threshold it is non-refundable. Only companies can claim, not trusts or sole traders, and the activities have to meet the definition of core or supporting R&D activities: experimental work whose outcome could not be known in advance, conducted to generate new knowledge.

The process has two halves. The R&D activities are registered with AusIndustry, which administers the program jointly with the ATO, within the registration deadline after the end of the income year. The offset is then claimed in the company's tax return. Both halves depend on contemporaneous records: a hypothesis, the experiments, the results, and the time and costs attributed to each activity, kept as the work is done. Claims reconstructed after the fact from a developer's memory are the ones that fail review.

We help founders set up the record keeping at the start of the year, separate the activities that qualify from ordinary development, prepare the registration and the claim, and manage any AusIndustry or ATO review. We also build the expected refund into the cash flow forecast, because its timing often decides whether a raise is needed before or after.

  • Eligibility assessment of the entity and the activities
  • Contemporaneous record keeping systems for R&D activities and costs
  • AusIndustry registration prepared and lodged on time
  • R&D tax incentive schedule in the company tax return
  • Overseas R&D and advance findings where work is done offshore
  • Review and audit support
03

ESIC, employee share schemes and the startup concessions

Investors in an early stage innovation company can receive a non-refundable tax offset on their investment and a capital gains tax exemption on the shares if they are held for the required period. For a startup that qualifies, ESIC status is a genuine advantage when raising from angels. Qualifying depends on an early stage test, based on the company's age, expenses and income, and an innovation test met through a points system or a principles-based assessment. We assess eligibility, document it and prepare the reporting the company must lodge with the ATO about investors who received new shares.

Employee share schemes are how startups pay people they cannot yet afford. The startup concessions in the ESS rules allow eligible companies to issue options or shares to employees at a discount without the employee being taxed on the discount up front, provided the company and the scheme meet the conditions on age, turnover, listing status and the terms of the offer. Get the conditions wrong and employees face tax on a benefit they cannot sell.

We help design the scheme with the company's lawyers, value the shares for the offer, maintain the ESS register and prepare the annual ESS statements and reporting.

04

SAFE notes, cap tables and raising capital

Most Australian startups now raise their first money on SAFE notes or convertible notes rather than priced equity. They are quick, but they are not simple. Each note has a valuation cap or a discount or both, some have most favoured nation clauses, and when they convert at the next priced round the dilution to founders is often larger than anyone modelled. We keep a cap table that shows the fully diluted position after every note converts and every option vests, and we model the next round before the term sheet is signed.

The accounting matters too. SAFEs and convertible notes have to be classified correctly in the financial statements, the money raised is not revenue, and investors in later rounds expect properly prepared accounts. Founders who come to a raise with clean Xero files, a reconciled cap table and a credible forecast get better terms than those who do not.

05

Burn rate, runway and subscription revenue

Burn rate is how much cash the company loses each month. Runway is how many months are left. Every founder knows those two numbers roughly; our job is to make them exact and show what moves them: the R&D refund, the next hire, a pricing change, a churned customer. We build a rolling forecast that is updated monthly and that the board can rely on.

Subscription revenue has its own recognition rules. An annual plan paid up front is cash today and revenue over twelve months. The accounts should show recurring revenue, deferred revenue, churn and net revenue retention, which are the metrics investors actually price. GST on software sold to Australian customers is straightforward, but sales to overseas customers are usually GST-free, and overseas subscription sales may trigger registration obligations in the customer's country once they pass local thresholds. The billing platform has to be set up to handle both.

Our virtual CFO service covers all of this for startups that are not yet ready for a full-time finance lead: board reporting, investor updates, forecasting and the finance side of the next raise.

06

Grants and export market development

Beyond the R&D Tax Incentive, Australian startups can access a range of federal and state grants, accelerators and commercialisation programs, and Queensland runs its own. Most are competitive, most have milestones and acquittal requirements, and almost all require financial statements and forecasts prepared to a standard. Grant income is generally assessable, and some programs interact with the R&D claim, so the two need to be planned together.

The Export Market Development Grants program reimburses part of the eligible spend on promoting products and services to overseas markets. The rules on who is eligible, what spend counts and how the grant is tiered have changed in recent years, so we check the current program guidelines, assess eligibility, help assemble the application and record the spend so it is claimable.

07

Going global and transfer pricing basics

Many software businesses sell overseas before they sell at home. The first steps offshore raise questions that are easy to ignore and expensive to fix: whether a United States subsidiary is needed for customers or investors, which entity owns the intellectual property, how the Australian company and the overseas company charge each other for development, sales and support, and where the profit ends up.

Transfer pricing is the set of rules that requires transactions between related entities in different countries to be priced as if they were between independent parties, and documented. It applies to startups, not just multinationals, as soon as there is a second entity. The common structures, an Australian company doing the R&D and licensing the product to an offshore sales entity, or an offshore parent with an Australian development subsidiary paid on a cost plus basis, each have tax, R&D and investor consequences. The R&D Tax Incentive, for example, is only available to eligible Australian entities, and moving intellectual property offshore can affect it.

We help founders choose the structure before the first overseas customer or investor forces one on them, prepare the intercompany agreements and transfer pricing documentation, and work with advisers in the relevant country. We are based in Victoria Point in the Redlands, with a second office in Jimboomba, and most of our startup clients work with us entirely by video.

  • Australian holding company and subsidiary structures for raising
  • Overseas subsidiary set-up decisions and timing
  • Intellectual property ownership and licensing between entities
  • Intercompany agreements and transfer pricing documentation
  • Foreign GST and sales tax registration for software sales
“Lauren & Greg have provided an end to end service which goes above and beyond what we were expecting.”
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Questions startups and software owners ask

Is the R&D Tax Incentive refundable for startups?

Yes, for eligible companies with aggregated turnover below the current threshold. The offset is refundable, so a company in a tax loss receives it as a cash refund after lodging its tax return. Companies above the threshold receive a non-refundable offset that reduces tax payable. The entity must be a company, the activities must meet the definition of eligible R&D, and they must be registered with AusIndustry by the deadline each year.

What is ESIC and how does my startup qualify?

An early stage innovation company is one that passes an early stage test, based on how recently it was incorporated, its expenses and its income, and an innovation test, met either through a points-based test or a principles-based assessment of its potential to scale. Investors in a qualifying company can get a tax offset and a capital gains tax exemption. The company must report new share issues to eligible investors to the ATO each year.

How do I account for a SAFE note?

A SAFE is money received now in exchange for shares to be issued at a future priced round. It is not revenue and not a loan in the ordinary sense. It is recorded as a liability or equity depending on its terms and the accounting framework applied, and it must be tracked on the cap table with its valuation cap and discount so the dilution on conversion is known. We model conversion before each raise so founders see the result.

What records do I need to keep for an R&D tax claim?

Contemporaneous records, meaning records made at the time the work is done. For each activity you need the hypothesis, the experiments or development work carried out, the observations and conclusions, and the staff time, contractor invoices and other costs attributed to it. Tickets, commits, test logs, design documents and timesheets all help. Claims rebuilt from memory at year end are the ones that fail an AusIndustry or ATO review.

How do employee share schemes work for startups in Australia?

Eligible startups can issue shares or options to employees under the startup concessions, which defer or remove the tax the employee would otherwise pay on the discount when the shares or options are granted. The company must meet conditions on age, turnover and listing status, and the offer must meet conditions on pricing and holding period. The company keeps an ESS register and lodges annual ESS reporting with the ATO.

Do I charge GST on software sold to overseas customers?

Usually no. Software, subscriptions and digital services supplied to customers outside Australia are generally GST-free, provided the customer is not in Australia when the supply is made and the other conditions are met. Sales to Australian customers attract GST. Once overseas sales pass the local registration threshold in a country, you may need to register for its own GST, VAT or sales tax. The billing platform must apply both rules correctly.

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